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Crystal structure of a histidine triad (hit) protein (mfla_2506) from methylobacillus flagellatus kt at 1.65 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 9 277 NANODROP, 0.1M NaCl, 30.0% PEG MME-550, 0.1M Bicine pH 9.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K, pH 9.00
Crystal Properties Matthews coefficient Solvent content 1.97 37.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.243 α = 108.13 b = 47.981 β = 98.22 c = 69.766 γ = 90.34
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD FLAT MIRROR (VERTICAL FOCUSING) 2006-12-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 45.549 93.5 0.118 7.36 3.94 62091 24.16
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.71 70.5 0.828 1.52 3.71
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.65 45.549 62091 3135 93.6 0.181 0.179 0.1877 0.223 0.2289 RANDOM 14.62
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.83 -0.7 -0.57 -0.57 -1.3 0.42
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.521 r_dihedral_angle_4_deg 16.485 r_dihedral_angle_3_deg 12.753 r_dihedral_angle_1_deg 6.064 r_scangle_it 5.521 r_scbond_it 4.056 r_mcangle_it 2.607 r_mcbond_it 1.913 r_angle_refined_deg 1.565 r_angle_other_deg 0.863
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.521 r_dihedral_angle_4_deg 16.485 r_dihedral_angle_3_deg 12.753 r_dihedral_angle_1_deg 6.064 r_scangle_it 5.521 r_scbond_it 4.056 r_mcangle_it 2.607 r_mcbond_it 1.913 r_angle_refined_deg 1.565 r_angle_other_deg 0.863 r_mcbond_other 0.697 r_symmetry_vdw_other 0.352 r_symmetry_vdw_refined 0.235 r_nbd_refined 0.21 r_nbd_other 0.196 r_nbtor_refined 0.177 r_xyhbond_nbd_refined 0.175 r_symmetry_hbond_refined 0.13 r_chiral_restr 0.093 r_nbtor_other 0.086 r_metal_ion_refined 0.075 r_bond_refined_d 0.015 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4380 Nucleic Acid Atoms Solvent Atoms 461 Heterogen Atoms 57
Software Software Software Name Purpose MolProbity model building SHELX phasing REFMAC refinement XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction SHELXD phasing autoSHARP phasing