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The Crystal Structure of Recombinant Cypovirus Polyhedra
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 300 The crystals used to determine this structure were directly purified from cells, in vivo crystallization in the cytoplasm of the cell, temperature 300K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 102.955 α = 90 b = 102.955 β = 90 c = 102.955 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 CCD MAR CCD 165 mm MD2 diffractometer 2005-05-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 0.97885 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 15 97.9 0.132 8.2 3.6 10773 10547 -3 17.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.1 2.17 98.2 0.435 2.6 2.6 1045
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIR THROUGHOUT 2.1 14.5 10697 10471 1037 97.89 0.135 0.135 0.129 0.1417 0.196 0.2019 RANDOM 15.523
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.142 r_dihedral_angle_4_deg 19.331 r_dihedral_angle_3_deg 13.003 r_dihedral_angle_1_deg 6.575 r_scangle_it 2.717 r_scbond_it 1.858 r_angle_refined_deg 1.378 r_mcangle_it 1.068 r_angle_other_deg 0.837 r_mcbond_it 0.832
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.142 r_dihedral_angle_4_deg 19.331 r_dihedral_angle_3_deg 13.003 r_dihedral_angle_1_deg 6.575 r_scangle_it 2.717 r_scbond_it 1.858 r_angle_refined_deg 1.378 r_mcangle_it 1.068 r_angle_other_deg 0.837 r_mcbond_it 0.832 r_symmetry_vdw_other 0.259 r_nbd_refined 0.206 r_nbd_other 0.191 r_nbtor_refined 0.188 r_symmetry_hbond_refined 0.183 r_xyhbond_nbd_refined 0.176 r_symmetry_vdw_refined 0.168 r_mcbond_other 0.152 r_nbtor_other 0.084 r_chiral_restr 0.081 r_metal_ion_refined 0.047 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2007 Nucleic Acid Atoms Solvent Atoms 142 Heterogen Atoms 95
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction SHARP phasing