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Crystal structure of COG1633: Uncharacterized conserved protein (ZP_00055496.1) from Magnetospirillum magnetotacticum MS-1 at 2.00 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.1 277 NANODROP, 0.2M NaF, 20.0% PEG-3350, pH 7.1, VAPOR DIFFUSION, SITTING DROP, temperature 277K, pH 7.10
Crystal Properties Matthews coefficient Solvent content 2.79 55.93
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.36 α = 90 b = 75.28 β = 90 c = 89.79 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD FLAT MIRROR (VERTICAL FOCUSING) 2006-12-18 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837, 0.97913 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 28.105 96.8 0.035 16.21 14778 37.83
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 94.5 0.365 2.16
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2 28.11 14778 744 97.7 0.195 0.192 0.1998 0.235 0.2449 RANDOM 36.89
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.24 -0.27 2.52
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.194 r_dihedral_angle_4_deg 22.839 r_dihedral_angle_3_deg 14.201 r_dihedral_angle_1_deg 5.156 r_scangle_it 3.785 r_scbond_it 2.434 r_angle_refined_deg 1.491 r_mcangle_it 1.479 r_angle_other_deg 0.909 r_mcbond_it 0.904
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.194 r_dihedral_angle_4_deg 22.839 r_dihedral_angle_3_deg 14.201 r_dihedral_angle_1_deg 5.156 r_scangle_it 3.785 r_scbond_it 2.434 r_angle_refined_deg 1.491 r_mcangle_it 1.479 r_angle_other_deg 0.909 r_mcbond_it 0.904 r_symmetry_vdw_other 0.344 r_symmetry_vdw_refined 0.283 r_mcbond_other 0.236 r_nbd_refined 0.225 r_nbd_other 0.193 r_nbtor_refined 0.185 r_xyhbond_nbd_refined 0.182 r_symmetry_hbond_refined 0.141 r_metal_ion_refined 0.092 r_nbtor_other 0.089 r_chiral_restr 0.083 r_bond_refined_d 0.019 r_gen_planes_refined 0.006 r_bond_other_d 0.003 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1178 Nucleic Acid Atoms Solvent Atoms 111 Heterogen Atoms 26
Software Software Software Name Purpose MolProbity model building SHELX phasing REFMAC refinement XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction SHELXD phasing autoSHARP phasing