☰ Navigation Tabs
T. Brucei Farnesyl Diphosphate Synthase Complexed with Bisphosphonate BPH-527
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2EWG pdb entry 2EWG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.75 298 10% MPD, 0.1 AMMONIUM ACETATE, PH 5.75, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K
Crystal Properties Matthews coefficient Solvent content 2.74 55.17
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 134.613 α = 90 b = 118.37 β = 112.16 c = 62.758 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 123.2 CCD ADSC QUANTUM 4 2006-06-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X8C NSLS X8C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 30 99.8 0.082 0.101 7.8 61155 17.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 99.5 0.538 7.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT pdb entry 2EWG 2 30 59297 1780 96.5 0.193 0.193 0.1884 0.229 0.2245 RANDOM 28.8
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.52 2.17 -6.35 2.83
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 18.8 c_scangle_it 4.99 c_scbond_it 3.85 c_mcangle_it 3.66 c_mcbond_it 3.04 c_angle_deg 1.207 c_improper_angle_d 0.79 c_bond_d 0.008 c_bond_d_na c_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 18.8 c_scangle_it 4.99 c_scbond_it 3.85 c_mcangle_it 3.66 c_mcbond_it 3.04 c_angle_deg 1.207 c_improper_angle_d 0.79 c_bond_d 0.008 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5736 Nucleic Acid Atoms Solvent Atoms 564 Heterogen Atoms 70
Software Software Software Name Purpose MOLREP phasing CNS refinement HKL-2000 data reduction HKL-2000 data scaling