2OFQ
NMR Solution Structure of a complex between the VirB9/VirB7 interaction domains of the pKM101 type IV secretion system
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_15N-separated_NOESY | 15N VirB7, unlabelled virB9, 20mM sodium phosphate buffer, 0.1mM EDTA, 90% H2O, 10% D2O | 90% H2O/10% D2O | 100mM NaCl | 6.7 | ambient | 298 | |
2 | 3D_13C-separated_NOESY | 15N,13C VirB7, unlabelled virB9, 20mM sodium phosphate buffer, 0.1mM EDTA | 100% D2O | 100mM NaCl | 6.7 | ambient | 298 | |
3 | 3D_15N-separated_NOESY | 15N VirB9, unlabelled virB7, 20mM sodium phosphate buffer, 0.1mM EDTA, 90% H2O, 10% D2O | 90% H2O/10% D2O | 100mM NaCl | 6.7 | ambient | 298 | |
4 | 3D_13C-separated_NOESY | 15N,13C VirB9, unlabelled virB7, 20mM sodium phosphate buffer, 0.1mM EDTA | 100% D2O | 100mM NaCl | 6.7 | ambient | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | UNITYPLUS | 500 |
2 | Varian | INOVA | 800 |
3 | Varian | INOVA | 600 |
4 | Varian | INOVA | 800 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | CNS |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | CNS | 1.1 | Brunger A. T. etall |