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The crystal structure of Sclerotium rolfsii lectin
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 289 0.2 M ammonium acetate, 0.1 M Tris/HCl, 30% MPD, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.48 50.33
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 99.811 α = 90 b = 99.811 β = 90 c = 63.991 γ = 90
Symmetry Space Group P 42 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2002-07-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7B 0.8441 EMBL/DESY, HAMBURG BW7B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.1 30 98.1 0.034 27.4 12.3 127739 127739 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.1 1.14 82.3 0.129 13.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIR THROUGHOUT 1.11 29.49 121313 6424 100 0.11963 0.11894 0.13275 RANDOM 7.989
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.11 0.11 -0.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.865 r_dihedral_angle_3_deg 11.47 r_dihedral_angle_4_deg 8.626 r_dihedral_angle_1_deg 6.458 r_sphericity_free 5.141 r_scangle_it 3.035 r_sphericity_bonded 2.986 r_scbond_it 2.353 r_mcangle_it 1.852 r_mcbond_it 1.488
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.865 r_dihedral_angle_3_deg 11.47 r_dihedral_angle_4_deg 8.626 r_dihedral_angle_1_deg 6.458 r_sphericity_free 5.141 r_scangle_it 3.035 r_sphericity_bonded 2.986 r_scbond_it 2.353 r_mcangle_it 1.852 r_mcbond_it 1.488 r_angle_refined_deg 1.456 r_rigid_bond_restr 1.358 r_angle_other_deg 0.892 r_mcbond_other 0.499 r_chiral_restr 0.33 r_symmetry_vdw_other 0.229 r_xyhbond_nbd_refined 0.22 r_symmetry_hbond_refined 0.209 r_nbd_refined 0.206 r_nbd_other 0.196 r_nbtor_refined 0.179 r_symmetry_vdw_refined 0.139 r_nbtor_other 0.084 r_bond_refined_d 0.01 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2343 Nucleic Acid Atoms Solvent Atoms 485 Heterogen Atoms 16
Software Software Software Name Purpose REFMAC refinement ADSC data collection DENZO data reduction SCALEPACK data scaling MLPHARE phasing