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Crystal structure of apo AVR4 (D39A/C122S)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.5 293 1.5-1.9M NaFormate, 0.1M Acetate, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.95 58.25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.611 α = 90 b = 77.611 β = 90 c = 110.483 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 optical hutch ID29 2005-12-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.35 63.25 98.8 0.038 38.2 6.5 73560 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.35 1.4 89.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.35 63.25 69780 3707 98.64 0.1715 0.17076 0.16967 0.1799 0.19173 0.2015 RANDOM 16.506
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.35 -0.35 0.71
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.007 r_scangle_it 3.4 r_sphericity_free 3.234 r_scbond_it 2.353 r_sphericity_bonded 2.008 r_mcangle_it 1.908 r_angle_refined_deg 1.453 r_rigid_bond_restr 1.401 r_mcbond_it 1.155 r_angle_other_deg 0.889
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.007 r_scangle_it 3.4 r_sphericity_free 3.234 r_scbond_it 2.353 r_sphericity_bonded 2.008 r_mcangle_it 1.908 r_angle_refined_deg 1.453 r_rigid_bond_restr 1.401 r_mcbond_it 1.155 r_angle_other_deg 0.889 r_chiral_restr 0.426 r_symmetry_vdw_other 0.267 r_nbd_other 0.26 r_nbd_refined 0.196 r_symmetry_hbond_refined 0.177 r_symmetry_vdw_refined 0.148 r_xyhbond_nbd_refined 0.125 r_nbtor_other 0.087 r_bond_refined_d 0.012 r_gen_planes_other 0.008 r_gen_planes_refined 0.007 r_bond_other_d 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1890 Nucleic Acid Atoms Solvent Atoms 179 Heterogen Atoms 45
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling REFMAC phasing