☰ Navigation Tabs
Crystal structure of AVR4 (D39A/C122S)-BNA complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.2 293 1.5-1.9M NaFormat, 0.1M Acetate, PH 4.2-4.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.98 58.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.175 α = 90 b = 78.175 β = 90 c = 110.294 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2005-06-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.05 63.25 100 0.062 47.5 11.3 150801 150801 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.05 1.09 100
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.05 63.25 150801 7965 99.94 0.165 0.16408 0.16343 0.1731 0.17659 0.1845 RANDOM 10.892
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.14 -0.14 0.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.95 r_scangle_it 2.631 r_sphericity_free 2.285 r_sphericity_bonded 2.091 r_scbond_it 1.75 r_mcangle_it 1.514 r_angle_refined_deg 1.462 r_angle_other_deg 0.946 r_rigid_bond_restr 0.927 r_mcbond_it 0.88
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.95 r_scangle_it 2.631 r_sphericity_free 2.285 r_sphericity_bonded 2.091 r_scbond_it 1.75 r_mcangle_it 1.514 r_angle_refined_deg 1.462 r_angle_other_deg 0.946 r_rigid_bond_restr 0.927 r_mcbond_it 0.88 r_chiral_restr 0.464 r_nbd_other 0.256 r_symmetry_vdw_other 0.229 r_nbd_refined 0.196 r_symmetry_vdw_refined 0.151 r_xyhbond_nbd_refined 0.119 r_symmetry_hbond_refined 0.102 r_nbtor_other 0.085 r_bond_refined_d 0.01 r_gen_planes_refined 0.006 r_gen_planes_other 0.005 r_bond_other_d 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1946 Nucleic Acid Atoms Solvent Atoms 278 Heterogen Atoms 50
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling REFMAC phasing