☰ Navigation Tabs
Protein of Unknown Function (DUF964) from Bacillus stearothermophilus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.8 295 0.2M Potassium dihydrogen phosphate, 15% PEG3350, pH 5.8, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.19 43.73
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.901 α = 69.67 b = 54.353 β = 81.93 c = 59.629 γ = 72.57
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD SBC-2 mirrors 2003-11-02 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97907, 0.97923 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.9 55.9 94.8 0.106 8.2 4.25 10827 10827
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.9 3 70.6 0.513 2.1 2.96 1085
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.9 34.17 9717 9717 1110 99.18 0.23164 0.23164 0.22222 0.2159 0.31437 0.3091 RANDOM 54.145
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.43 -0.69 0.52 -0.07 -1.67 0.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.668 r_dihedral_angle_4_deg 23.681 r_dihedral_angle_3_deg 22.13 r_mcangle_it 22.051 r_mcbond_it 16.146 r_angle_refined_deg 1.576 r_dihedral_angle_1_deg 1.221 r_nbd_refined 0.321 r_symmetry_vdw_refined 0.289 r_symmetry_hbond_refined 0.238
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.668 r_dihedral_angle_4_deg 23.681 r_dihedral_angle_3_deg 22.13 r_mcangle_it 22.051 r_mcbond_it 16.146 r_angle_refined_deg 1.576 r_dihedral_angle_1_deg 1.221 r_nbd_refined 0.321 r_symmetry_vdw_refined 0.289 r_symmetry_hbond_refined 0.238 r_xyhbond_nbd_refined 0.187 r_chiral_restr 0.104 r_bond_refined_d 0.013 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_scbond_it r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3745 Nucleic Acid Atoms Solvent Atoms 88 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-2000 data reduction HKL-2000 data scaling HKL-3000 phasing SHELXCD phasing SHELXD phasing SHELXE model building MLPHARE phasing SOLVE phasing RESOLVE phasing PHENIX phasing CNS refinement