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Crystal structure of human FE65-WW domain in complex with human Mena peptide
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.6 293 1.3 M sodium citrate, 0.1M hepes, pH 7.6, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.56 51.87
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36.436 α = 90 b = 36.436 β = 90 c = 78.78 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2006-09-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X12B NSLS X12B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.27 50 97.6 0.044 0.036 21.4 7.5 14732 14379 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.27 1.32 93.5 0.386 5.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.35 25.77 11423 586 97.65 0.1938 0.19226 0.2049 0.2238 0.2268 RANDOM 21.119
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.147 r_dihedral_angle_3_deg 14.316 r_sphericity_free 9.964 r_dihedral_angle_4_deg 7.731 r_dihedral_angle_1_deg 6.595 r_scangle_it 4.502 r_sphericity_bonded 4.441 r_scbond_it 4.083 r_rigid_bond_restr 3.18 r_mcangle_it 2.954
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.147 r_dihedral_angle_3_deg 14.316 r_sphericity_free 9.964 r_dihedral_angle_4_deg 7.731 r_dihedral_angle_1_deg 6.595 r_scangle_it 4.502 r_sphericity_bonded 4.441 r_scbond_it 4.083 r_rigid_bond_restr 3.18 r_mcangle_it 2.954 r_mcbond_it 2.349 r_angle_refined_deg 1.711 r_angle_other_deg 1.073 r_mcbond_other 0.917 r_symmetry_vdw_other 0.225 r_nbd_refined 0.217 r_nbd_other 0.21 r_nbtor_refined 0.192 r_xyhbond_nbd_refined 0.144 r_chiral_restr 0.096 r_nbtor_other 0.09 r_symmetry_hbond_refined 0.079 r_symmetry_vdw_refined 0.066 r_bond_refined_d 0.019 r_gen_planes_refined 0.01 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 365 Nucleic Acid Atoms Solvent Atoms 36 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction ADSC data collection HKL-2000 data reduction MOLREP phasing