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Crystal structure of a fragment of the plakin domain of plectin
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 295 0.1M Citrate Phosphate pH 4.6, 10% 1,2-propanediol, 5% PEG 3000, 4% Glycerol, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.28 46.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 154.15 α = 90 b = 26.34 β = 90 c = 58.23 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2006-10-05 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 0.9785, 0.9185 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 46.5 99.9 22.4 8.1 11241 -3 37.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.38 100 4.9 8.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.3 46.47 11237 10704 533 99.94 0.21873 0.21616 0.2132 0.2693 0.2675 RANDOM 40.371
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.01 -1.33 2.35
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.551 r_dihedral_angle_3_deg 20.161 r_dihedral_angle_4_deg 14.932 r_dihedral_angle_1_deg 5.44 r_scangle_it 3.677 r_scbond_it 2.374 r_angle_refined_deg 1.564 r_mcangle_it 1.362 r_mcbond_it 0.874 r_nbtor_refined 0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.551 r_dihedral_angle_3_deg 20.161 r_dihedral_angle_4_deg 14.932 r_dihedral_angle_1_deg 5.44 r_scangle_it 3.677 r_scbond_it 2.374 r_angle_refined_deg 1.564 r_mcangle_it 1.362 r_mcbond_it 0.874 r_nbtor_refined 0.3 r_symmetry_vdw_refined 0.276 r_symmetry_hbond_refined 0.253 r_nbd_refined 0.224 r_xyhbond_nbd_refined 0.145 r_chiral_restr 0.102 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1795 Nucleic Acid Atoms Solvent Atoms 16 Heterogen Atoms
Software Software Software Name Purpose SHELX model building REFMAC refinement MxCuBE data collection XDS data reduction XSCALE data scaling SHELX phasing