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Crystal structure of S. aureus YlaN, an essential leucine rich protein involved in the control of cell shape
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 291 0.2M Sodium acetate, 0.1M Tris-HCl pH 8.5, 20% PEG4000, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 1.99 38.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 31.425 α = 90 b = 42.771 β = 92.42 c = 62.593 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2005-06-26 M MAD 2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX10.1 0.98000 SRS PX10.1 2 SYNCHROTRON SRS BEAMLINE PX9.6 1.50000 SRS PX9.6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.24 25 100 0.079 0.079 10.5 3.6 7464 51
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.24 99.7 0.429 0.429 2.6 3.6 1072
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.24 15 7464 7464 365 99.16 0.22659 0.22373 0.2209 0.28317 0.2797 RANDOM 59.86
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.13 -0.05 -2.32 4.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.665 r_dihedral_angle_4_deg 25.064 r_dihedral_angle_3_deg 18.898 r_scangle_it 10.97 r_scbond_it 8.945 r_mcangle_it 8.774 r_mcbond_it 7.141 r_dihedral_angle_1_deg 4.11 r_angle_refined_deg 1.031 r_nbtor_refined 0.278
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.665 r_dihedral_angle_4_deg 25.064 r_dihedral_angle_3_deg 18.898 r_scangle_it 10.97 r_scbond_it 8.945 r_mcangle_it 8.774 r_mcbond_it 7.141 r_dihedral_angle_1_deg 4.11 r_angle_refined_deg 1.031 r_nbtor_refined 0.278 r_nbd_refined 0.186 r_symmetry_vdw_refined 0.16 r_symmetry_hbond_refined 0.101 r_xyhbond_nbd_refined 0.067 r_chiral_restr 0.054 r_bond_refined_d 0.007 r_gen_planes_refined 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1297 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SOLVE phasing SHARP phasing