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The crystal structure of gene product Atu2144 from Agrobacterium tumefaciens
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 298 5% Isopropanol, 2M Ammonium sulfate, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.65 53.66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 110.523 α = 90 b = 89.765 β = 91.35 c = 120.365 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 mirrors 2006-03-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97980 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 120 98.98 0.083 22 4.6 175032 173247 2 24.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.952 95.72 0.42 2.3 3.8 13470
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.9 120 173247 9148 98.98 0.19113 0.18891 0.23394 0.2342 RANDOM 23.245
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.24 0.43 -1.25 1.51
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.119 r_dihedral_angle_4_deg 18.017 r_dihedral_angle_3_deg 14.397 r_dihedral_angle_1_deg 5.956 r_scangle_it 2.889 r_scbond_it 2.015 r_angle_refined_deg 1.358 r_mcangle_it 1.166 r_mcbond_it 1.072 r_angle_other_deg 0.939
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.119 r_dihedral_angle_4_deg 18.017 r_dihedral_angle_3_deg 14.397 r_dihedral_angle_1_deg 5.956 r_scangle_it 2.889 r_scbond_it 2.015 r_angle_refined_deg 1.358 r_mcangle_it 1.166 r_mcbond_it 1.072 r_angle_other_deg 0.939 r_symmetry_vdw_other 0.238 r_nbd_refined 0.219 r_nbd_other 0.203 r_symmetry_vdw_refined 0.19 r_xyhbond_nbd_refined 0.179 r_nbtor_refined 0.172 r_mcbond_other 0.16 r_symmetry_hbond_refined 0.148 r_nbtor_other 0.085 r_chiral_restr 0.079 r_xyhbond_nbd_other 0.042 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 15391 Nucleic Acid Atoms Solvent Atoms 1613 Heterogen Atoms 50
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-2000 data reduction HKL-2000 data scaling HKL-3000 phasing SHELXE model building SOLVE phasing RESOLVE phasing ARP/wARP model building