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Crystal structure of a duf1611 family protein (ava_3511) from anabaena variabilis atcc 29413 at 2.30 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP, NANODROP 7.2 277 0.2M NaFormate, 20.0% PEG-3350, No Buffer pH 7.2, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.25 45.39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 75.09 α = 90 b = 123.07 β = 103.1 c = 75.21 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2006-10-08 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.3 1.0000, 0.9806, 0.9805 ALS 5.0.3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 29.26 93.5 0.056 9.71 58378 40.054
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.38 85.6 0.307 2.4 9700
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.3 29.26 58346 2964 98.73 0.177 0.175 0.1807 0.214 0.2213 RANDOM 37.889
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.1 1.42 1.11 -1.57
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.992 r_dihedral_angle_4_deg 14.049 r_dihedral_angle_3_deg 10.592 r_scangle_it 4.042 r_dihedral_angle_1_deg 3.226 r_scbond_it 2.758 r_mcangle_it 1.528 r_angle_refined_deg 1.464 r_mcbond_it 1.05 r_angle_other_deg 0.89
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.992 r_dihedral_angle_4_deg 14.049 r_dihedral_angle_3_deg 10.592 r_scangle_it 4.042 r_dihedral_angle_1_deg 3.226 r_scbond_it 2.758 r_mcangle_it 1.528 r_angle_refined_deg 1.464 r_mcbond_it 1.05 r_angle_other_deg 0.89 r_mcbond_other 0.313 r_nbd_refined 0.192 r_xyhbond_nbd_refined 0.187 r_symmetry_hbond_refined 0.168 r_nbtor_refined 0.165 r_nbd_other 0.154 r_symmetry_vdw_other 0.151 r_symmetry_vdw_refined 0.147 r_nbtor_other 0.083 r_chiral_restr 0.079 r_xyhbond_nbd_other 0.02 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10117 Nucleic Acid Atoms Solvent Atoms 521 Heterogen Atoms 72
Software Software Software Name Purpose MolProbity model building SHELX phasing REFMAC refinement XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction SHELXD phasing autoSHARP phasing