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Structure of SHH variant of "Bergerac" chimera of spectrin SH3
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1SHG pdb entry 1SHG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 295 7,5% Na malonate, 20mM AcNa, 100 mM glycine, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.37 48.15
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.47 α = 90 b = 57.55 β = 90 c = 101.39 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD mirrors 2005-10-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X12 EMBL/DESY, HAMBURG X12
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 20.64 90.7 0.161 0.072 8.21 2.47 21425
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2.01 83.8 0.511 0.327 2.34 2.38 3129
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT pdb entry 1SHG 1.9 20.64 21425 1146 97.64 0.21524 0.21524 0.2127 0.21 0.26411 0.2576 RANDOM 25.629
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.07 0.21 -0.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.382 r_dihedral_angle_3_deg 18.855 r_sphericity_bonded 15.262 r_dihedral_angle_4_deg 15.084 r_sphericity_free 9.796 r_dihedral_angle_1_deg 5.681 r_scangle_it 4.927 r_scbond_it 3.452 r_mcangle_it 2.806 r_rigid_bond_restr 2.492
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.382 r_dihedral_angle_3_deg 18.855 r_sphericity_bonded 15.262 r_dihedral_angle_4_deg 15.084 r_sphericity_free 9.796 r_dihedral_angle_1_deg 5.681 r_scangle_it 4.927 r_scbond_it 3.452 r_mcangle_it 2.806 r_rigid_bond_restr 2.492 r_mcbond_it 1.799 r_angle_refined_deg 1.535 r_nbtor_refined 0.312 r_nbd_refined 0.211 r_symmetry_vdw_refined 0.185 r_xyhbond_nbd_refined 0.163 r_symmetry_hbond_refined 0.129 r_chiral_restr 0.11 r_bond_refined_d 0.015 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2144 Nucleic Acid Atoms Solvent Atoms 134 Heterogen Atoms 9
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling PHASER phasing