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Restriction endonuclease MvaI in the absence of DNA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.7 294 0.05 M CADMIUM SULFATE HYDRATE, 0.1 M HEPES PH 7.74, 1.2 M SODIUM ACETATE TRIHYDRATE, 0.17 M GLYCINE, VAPOR DIFFUSION, SITTING DROP, temperature 294K, pH 7.70
Crystal Properties Matthews coefficient Solvent content 2.28 45.98
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.499 α = 90 b = 63.281 β = 100.77 c = 71.892 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH BENT MIRROR 2006-05-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MPG/DESY, HAMBURG BEAMLINE BW6 MPG/DESY, HAMBURG BW6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 20 91.2 0.06 30.8 3.1 75246 19.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.5 1.52 99.6 0.23 4.1 2.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.5 19.8 72535 72535 3629 93.9 0.186 0.184 0.212 0.212 0.2391 RANDOM 17.4
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.06 -0.44 0.86 -2.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.63 r_scangle_it 3.979 r_scbond_it 2.66 r_mcangle_it 1.801 r_angle_refined_deg 1.525 r_mcbond_it 1.012 r_angle_other_deg 0.821 r_symmetry_vdw_other 0.336 r_nbd_other 0.251 r_symmetry_vdw_refined 0.239
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.63 r_scangle_it 3.979 r_scbond_it 2.66 r_mcangle_it 1.801 r_angle_refined_deg 1.525 r_mcbond_it 1.012 r_angle_other_deg 0.821 r_symmetry_vdw_other 0.336 r_nbd_other 0.251 r_symmetry_vdw_refined 0.239 r_symmetry_hbond_refined 0.233 r_nbd_refined 0.227 r_metal_ion_refined 0.211 r_xyhbond_nbd_refined 0.189 r_chiral_restr 0.1 r_nbtor_other 0.085 r_bond_refined_d 0.014 r_gen_planes_other 0.01 r_gen_planes_refined 0.008 r_bond_other_d 0.007 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3847 Nucleic Acid Atoms Solvent Atoms 288 Heterogen Atoms 25
Software Software Software Name Purpose SHELXD phasing SHARP phasing NCSREF model building REFMAC refinement DENZO data reduction SCALEPACK data scaling DM phasing ARP/wARP model building