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Monellin (MNEI) at 1.15 resolution
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1N98
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 291 0.2M Ammonium sulfate, 30% PEG4000, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 1.99 38.06
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 27.103 α = 90 b = 66.316 β = 111.6 c = 27.154 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2004-10-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 0.933 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.15 22.44 88.3 0.043 3.8 27957 9.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.15 1.21 54.2 0.298 4.5 3.5 2513
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1N98 1.15 22.44 27957 1392 88.29 0.201 0.133 0.131 0.1367 0.165 0.166 RANDOM 12.723
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.08 0.1 0.01 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.452 r_dihedral_angle_4_deg 18.212 r_dihedral_angle_3_deg 17.681 r_dihedral_angle_1_deg 15.276 r_sphericity_free 15.026 r_scangle_it 7.308 r_sphericity_bonded 6.518 r_scbond_it 6.087 r_mcangle_it 4.361 r_mcbond_it 3.543
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.452 r_dihedral_angle_4_deg 18.212 r_dihedral_angle_3_deg 17.681 r_dihedral_angle_1_deg 15.276 r_sphericity_free 15.026 r_scangle_it 7.308 r_sphericity_bonded 6.518 r_scbond_it 6.087 r_mcangle_it 4.361 r_mcbond_it 3.543 r_rigid_bond_restr 2.922 r_angle_refined_deg 2.102 r_mcbond_other 1.418 r_angle_other_deg 1.238 r_nbd_refined 0.665 r_chiral_restr 0.458 r_xyhbond_nbd_refined 0.451 r_symmetry_vdw_refined 0.432 r_xyhbond_nbd_other 0.411 r_symmetry_vdw_other 0.398 r_nbd_other 0.348 r_nbtor_refined 0.276 r_symmetry_hbond_refined 0.252 r_nbtor_other 0.107 r_bond_refined_d 0.027 r_gen_planes_refined 0.017 r_gen_planes_other 0.004 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1054 Nucleic Acid Atoms Solvent Atoms 143 Heterogen Atoms 20
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction ADSC data collection MOSFLM data reduction CCP4 data scaling MOLREP phasing