2O9E

Crystal Structure of AqpZ mutant T183C complexed with mercury


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.5hanging drop with 1:1 addition of protien and mothor liquor, 25% polyethylene glycol monomethyl ether 2000, 100 mM sodium cacodylate, 100 mM MgCl2, 1 mM HgCl2, pH 6.5, VAPOR DIFFUSION, HANGING DROP
Crystal Properties
Matthews coefficientSolvent content
3.3963.72

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 91.103α = 90
b = 91.103β = 90
c = 77.944γ = 90
Symmetry
Space GroupI 4

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-rayCCDADSC QUANTUM 210MSINGLE WAVELENGTH
21
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 8.3.1ALS8.3.1
2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.264.4299.80.0880.0886.13.516199
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.22.321000.5940.5940.83.52350

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.264.421619581599.660.1960.1930.243RANDOM36.376
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.3-0.30.6
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.861
r_dihedral_angle_4_deg19.729
r_dihedral_angle_3_deg17.872
r_sphericity_free16.99
r_dihedral_angle_1_deg6.171
r_scangle_it2.642
r_scbond_it1.98
r_angle_refined_deg1.638
r_mcangle_it1.455
r_mcbond_it0.873
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.861
r_dihedral_angle_4_deg19.729
r_dihedral_angle_3_deg17.872
r_sphericity_free16.99
r_dihedral_angle_1_deg6.171
r_scangle_it2.642
r_scbond_it1.98
r_angle_refined_deg1.638
r_mcangle_it1.455
r_mcbond_it0.873
r_nbtor_refined0.307
r_xyhbond_nbd_refined0.223
r_nbd_refined0.218
r_symmetry_vdw_refined0.172
r_symmetry_hbond_refined0.157
r_chiral_restr0.122
r_bond_refined_d0.015
r_gen_planes_refined0.006
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1670
Nucleic Acid Atoms
Solvent Atoms62
Heterogen Atoms3

Software

Software
Software NamePurpose
SCALAdata scaling
PHASERphasing
REFMACrefinement
PDB_EXTRACTdata extraction
CCP4data scaling