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Crystal Structure of the Metal-Free Dimeric Human Mov34 MPN domain (residues 1-177)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2O95 PDB ENTRY 2O95
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 291 0.1M citrate, 0,2M NH4OAc, 30% PEG 4000, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 3.53 65.12
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 114.701 α = 90 b = 96.01 β = 122.14 c = 60.982 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2006-06-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON LNLS BEAMLINE D03B-MX1 1.427 LNLS D03B-MX1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 68.278 93.9 0.088 0.088 7.9 3 13093 10578 1.3 76.858
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3 3.16 96.3 0.562 0.562 1.3 2.9 1547
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2O95 3 51.64 10577 10068 509 93.88 0.206 0.206 0.204 0.1957 0.26 0.2455 RANDOM 29.481
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.45 0.27 0.04 -0.2
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.657 r_dihedral_angle_4_deg 23.809 r_dihedral_angle_3_deg 20.471 r_dihedral_angle_1_deg 7.172 r_scangle_it 3.175 r_mcangle_it 2.543 r_scbond_it 1.914 r_angle_refined_deg 1.59 r_mcbond_it 1.432 r_nbtor_refined 0.328
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.657 r_dihedral_angle_4_deg 23.809 r_dihedral_angle_3_deg 20.471 r_dihedral_angle_1_deg 7.172 r_scangle_it 3.175 r_mcangle_it 2.543 r_scbond_it 1.914 r_angle_refined_deg 1.59 r_mcbond_it 1.432 r_nbtor_refined 0.328 r_nbd_refined 0.267 r_symmetry_vdw_refined 0.258 r_xyhbond_nbd_refined 0.18 r_chiral_restr 0.101 r_symmetry_hbond_refined 0.019 r_bond_refined_d 0.015 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2557 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose SCALA data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction MAR345dtb data collection MOSFLM data reduction