☰ Navigation Tabs
Human euchromatic histone methyltransferase 2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2IGQ PDB ENTRY 2IGQ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 300 peg 3350, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 300K
Crystal Properties Matthews coefficient Solvent content 2.45 49.83
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.586 α = 81.11 b = 70.965 β = 75.13 c = 83.046 γ = 88.39
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2006-11-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 1.0 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 79.3 92.23 0.048 13.7 3.2 100323 100323
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2IGQ 1.8 79.31 100323 100323 5287 92.23 0.18385 0.18385 0.18185 0.1795 0.22124 0.2191 RANDOM 25.168
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.86 -0.83 -0.25 0.26 0.74 0.55
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.329 r_dihedral_angle_4_deg 15.27 r_dihedral_angle_3_deg 13.225 r_dihedral_angle_1_deg 6.077 r_scangle_it 3.497 r_scbond_it 2.322 r_mcangle_it 1.547 r_angle_refined_deg 1.347 r_mcbond_it 0.958 r_nbtor_refined 0.307
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.329 r_dihedral_angle_4_deg 15.27 r_dihedral_angle_3_deg 13.225 r_dihedral_angle_1_deg 6.077 r_scangle_it 3.497 r_scbond_it 2.322 r_mcangle_it 1.547 r_angle_refined_deg 1.347 r_mcbond_it 0.958 r_nbtor_refined 0.307 r_nbd_refined 0.193 r_symmetry_vdw_refined 0.176 r_xyhbond_nbd_refined 0.141 r_symmetry_hbond_refined 0.114 r_chiral_restr 0.09 r_bond_refined_d 0.013 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8327 Nucleic Acid Atoms Solvent Atoms 1063 Heterogen Atoms 120
Software Software Software Name Purpose REFMAC refinement CrystalClear data collection HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing