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Crystal structure of a tetr family transcriptional regulator (ncgl1578, cgl1640) from corynebacterium glutamicum at 2.10 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP, NANODROP 8.5 277 15.0% Glycerol, 0.17M NaOAc, 25.5% PEG-4000, 0.1M TRIS pH 8.5, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.22 44.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.197 α = 90 b = 51.197 β = 90 c = 129.629 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2006-11-20 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.92522, 0.97975 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 26.162 99.8 0.083 0.083 6.1 5.1 12118
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.15 98.9 0.686 0.686 1.1 4.4 865
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.1 26.162 12078 578 99.77 0.183 0.18 0.1903 0.23 0.23 RANDOM 38.481
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.26 0.13 0.26 -0.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.691 r_dihedral_angle_4_deg 14.291 r_dihedral_angle_3_deg 11.469 r_scangle_it 6.99 r_scbond_it 5.086 r_dihedral_angle_1_deg 3.198 r_mcangle_it 3.055 r_mcbond_it 2.054 r_angle_refined_deg 1.423 r_angle_other_deg 0.792
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.691 r_dihedral_angle_4_deg 14.291 r_dihedral_angle_3_deg 11.469 r_scangle_it 6.99 r_scbond_it 5.086 r_dihedral_angle_1_deg 3.198 r_mcangle_it 3.055 r_mcbond_it 2.054 r_angle_refined_deg 1.423 r_angle_other_deg 0.792 r_mcbond_other 0.525 r_symmetry_vdw_refined 0.231 r_symmetry_hbond_refined 0.228 r_nbd_refined 0.223 r_xyhbond_nbd_refined 0.201 r_symmetry_vdw_other 0.185 r_nbtor_refined 0.182 r_nbd_other 0.157 r_nbtor_other 0.087 r_chiral_restr 0.082 r_bond_refined_d 0.014 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1429 Nucleic Acid Atoms Solvent Atoms 72 Heterogen Atoms 30
Software Software Software Name Purpose MolProbity model building SOLVE phasing REFMAC refinement SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction CCP4 data scaling