X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1ZIJ 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP629330% 2-Proponal, 0.2M Sodium Citrate, 0.1M Sodium cacodylate, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
1.8232.34

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 76.051α = 90
b = 56.256β = 129.05
c = 54.863γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMARRESEARCHOsmic mirrors2006-04-12MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODEENRAF-NONIUS FR5911.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.865098.81514615146-3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.861.9198.20.1627.59

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1ZIJ1.8642.61438475999.580.181280.181280.178550.23097RANDOM21.84
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.220.71-0.720.39
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.022
r_dihedral_angle_3_deg15.36
r_dihedral_angle_4_deg13.213
r_scangle_it7.69
r_scbond_it5.429
r_dihedral_angle_1_deg3.274
r_mcangle_it3.14
r_mcbond_it2.16
r_angle_refined_deg1.102
r_symmetry_hbond_refined0.435
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.022
r_dihedral_angle_3_deg15.36
r_dihedral_angle_4_deg13.213
r_scangle_it7.69
r_scbond_it5.429
r_dihedral_angle_1_deg3.274
r_mcangle_it3.14
r_mcbond_it2.16
r_angle_refined_deg1.102
r_symmetry_hbond_refined0.435
r_nbtor_refined0.29
r_nbd_refined0.191
r_symmetry_vdw_refined0.189
r_xyhbond_nbd_refined0.155
r_chiral_restr0.07
r_bond_refined_d0.01
r_gen_planes_refined0.004
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1596
Nucleic Acid Atoms
Solvent Atoms184
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
MAR345data collection
XDSdata reduction
XSCALEdata scaling
PHASERphasing