☰ Navigation Tabs
Structure of an Enterococcus Faecalis HD Domain Phosphohydrolase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.3 295 0.2 M di-Sodium tartate dihydrate, 20 % w/v Polyethylene glycol 3350, pH 8.3, VAPOR DIFFUSION, SITTING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.84 56.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 109.913 α = 90 b = 109.913 β = 90 c = 182.412 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH Mirrors 2006-01-31 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD ADSC QUANTUM 315 Mirrors 2006-02-11 M SINGLE WAVELENGTH 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1.0000 APS 22-ID 2 SYNCHROTRON APS BEAMLINE 19-ID 1.0088 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2.55 30 96.4 0.08 18 6.1 40637 40637 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 2.55 2.64 76 0.5 2.4 4.3 3151
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT 2.55 30 38552 2049 96.35 0.25179 0.24845 0.2412 0.31715 0.3088 RANDOM 68.725
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.62 1.81 3.62 -5.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 24.595 r_dihedral_angle_3_deg 10.153 r_dihedral_angle_4_deg 8.666 r_dihedral_angle_1_deg 1.968 r_scangle_it 1.245 r_angle_refined_deg 1.082 r_scbond_it 0.735 r_mcangle_it 0.572 r_mcbond_it 0.32 r_nbtor_refined 0.318
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 24.595 r_dihedral_angle_3_deg 10.153 r_dihedral_angle_4_deg 8.666 r_dihedral_angle_1_deg 1.968 r_scangle_it 1.245 r_angle_refined_deg 1.082 r_scbond_it 0.735 r_mcangle_it 0.572 r_mcbond_it 0.32 r_nbtor_refined 0.318 r_nbd_refined 0.202 r_xyhbond_nbd_refined 0.192 r_symmetry_hbond_refined 0.188 r_symmetry_vdw_refined 0.173 r_chiral_restr 0.088 r_metal_ion_refined 0.069 r_bond_refined_d 0.005 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7081 Nucleic Acid Atoms Solvent Atoms 297 Heterogen Atoms 12
Software Software Software Name Purpose REFMAC refinement MAR345 data collection HKL-2000 data reduction HKL-2000 data scaling PHENIX phasing SHARP phasing