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Crystal Structure of Haemophilus influenzae N193L mutant FbpA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1D9V PDB Entry 1D9V
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 277 PEG 550 MME, Tris, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 277.0K
Crystal Properties Matthews coefficient Solvent content 1.97 37.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 105.612 α = 90 b = 75.429 β = 90 c = 33.436 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD BRUKER SMART 6000 2002-07-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.99 43.26 99.6 18804 18729
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.99 2.12 99.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB Entry 1D9V 2 20 17803 17742 965 99.65 0.20727 0.20727 0.20439 0.2151 0.25947 0.2682 RANDOM 40.853
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.76 1.29 0.47
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.509 r_scangle_it 4.48 r_scbond_it 2.743 r_mcangle_it 1.641 r_angle_refined_deg 1.592 r_mcbond_it 0.926 r_angle_other_deg 0.919 r_symmetry_vdw_other 0.302 r_nbd_other 0.242 r_symmetry_vdw_refined 0.227
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.509 r_scangle_it 4.48 r_scbond_it 2.743 r_mcangle_it 1.641 r_angle_refined_deg 1.592 r_mcbond_it 0.926 r_angle_other_deg 0.919 r_symmetry_vdw_other 0.302 r_nbd_other 0.242 r_symmetry_vdw_refined 0.227 r_nbd_refined 0.196 r_xyhbond_nbd_refined 0.166 r_symmetry_hbond_refined 0.152 r_chiral_restr 0.099 r_nbtor_other 0.086 r_metal_ion_refined 0.026 r_bond_refined_d 0.019 r_gen_planes_refined 0.007 r_gen_planes_other 0.004 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2276 Nucleic Acid Atoms Solvent Atoms 127 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling XFIT data reduction