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Crystal Structure of Haemophilus influenzae Q58L mutant FbpA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1D9V PDB Entry 1D9V
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 277 PEG 550 MME, Tris, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 277.0K
Crystal Properties Matthews coefficient Solvent content 2.01 38.92
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 105.771 α = 90 b = 75.736 β = 90 c = 33.953 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD BRUKER SMART 6000 2002-07-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 75.76 89.05 30920 27533
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.7 1.83 89
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB Entry 1D9V 1.7 62.02 29309 26115 1368 89.1 0.19791 0.19791 0.19535 0.2484 RANDOM 14.703
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.86 0.26 0.6
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.251 r_scangle_it 2.51 r_scbond_it 1.496 r_angle_refined_deg 1.061 r_mcangle_it 0.964 r_angle_other_deg 0.734 r_mcbond_it 0.516 r_symmetry_vdw_other 0.258 r_symmetry_vdw_refined 0.256 r_nbd_other 0.235
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.251 r_scangle_it 2.51 r_scbond_it 1.496 r_angle_refined_deg 1.061 r_mcangle_it 0.964 r_angle_other_deg 0.734 r_mcbond_it 0.516 r_symmetry_vdw_other 0.258 r_symmetry_vdw_refined 0.256 r_nbd_other 0.235 r_nbd_refined 0.193 r_xyhbond_nbd_refined 0.16 r_symmetry_hbond_refined 0.145 r_nbtor_other 0.081 r_metal_ion_refined 0.07 r_chiral_restr 0.06 r_bond_refined_d 0.008 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2265 Nucleic Acid Atoms Solvent Atoms 360 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling XFIT data reduction