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Crystal structure of Pim1 with Pentahydroxyflavone
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 277 NA ACETATE, IMIDAZOLE, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.34 63.17
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 98.652 α = 90 b = 98.652 β = 90 c = 80.472 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.10000 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.85 84.51 99.79 0.138 5.1 4.9 9976 9976
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.85 2.92 100 0.776 1.6 4.9 3799
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.85 84.51 9976 9976 501 99.79 0.21034 0.21034 0.20768 0.26166 RANDOM 20.701
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 5.8 2.9 5.8 -8.7
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 2.949 r_scangle_it 1.953 r_angle_refined_deg 1.545 r_scbond_it 1.091 r_angle_other_deg 0.868 r_mcangle_it 0.82 r_mcbond_it 0.427 r_xyhbond_nbd_refined 0.245 r_nbd_other 0.22 r_symmetry_vdw_other 0.219
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 2.949 r_scangle_it 1.953 r_angle_refined_deg 1.545 r_scbond_it 1.091 r_angle_other_deg 0.868 r_mcangle_it 0.82 r_mcbond_it 0.427 r_xyhbond_nbd_refined 0.245 r_nbd_other 0.22 r_symmetry_vdw_other 0.219 r_nbd_refined 0.211 r_symmetry_hbond_refined 0.131 r_symmetry_vdw_refined 0.112 r_chiral_restr 0.094 r_nbtor_other 0.087 r_bond_refined_d 0.013 r_gen_planes_refined 0.005 r_gen_planes_other 0.003 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2230 Nucleic Acid Atoms Solvent Atoms 25 Heterogen Atoms 27
Software Software Software Name Purpose REFMAC refinement Blu-Ice data collection MOSFLM data reduction CCP4 data scaling CCP4 phasing