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Crystal structure of Pim1 with Quercetagetin
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 277 NA ACETATE, IMIDAZOLE, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.3 62.72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 97.755 α = 90 b = 97.755 β = 90 c = 80.97 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.10000 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.44 84.51 99.97 0.087 8 6 15599 15599
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.44 2.504 100 0.56 2.3 4.2 1227
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.44 84.51 15599 15599 841 99.97 0.19114 0.19114 0.18913 0.22957 RANDOM 27.272
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.62 1.81 3.62 -5.43
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 3.19 r_scangle_it 2.96 r_scbond_it 1.707 r_angle_refined_deg 1.497 r_mcangle_it 1.303 r_angle_other_deg 0.852 r_mcbond_it 0.679 r_symmetry_vdw_other 0.25 r_nbd_other 0.233 r_nbd_refined 0.201
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 3.19 r_scangle_it 2.96 r_scbond_it 1.707 r_angle_refined_deg 1.497 r_mcangle_it 1.303 r_angle_other_deg 0.852 r_mcbond_it 0.679 r_symmetry_vdw_other 0.25 r_nbd_other 0.233 r_nbd_refined 0.201 r_xyhbond_nbd_refined 0.171 r_symmetry_hbond_refined 0.133 r_chiral_restr 0.092 r_nbtor_other 0.084 r_symmetry_vdw_refined 0.084 r_bond_refined_d 0.013 r_gen_planes_refined 0.005 r_gen_planes_other 0.004 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2230 Nucleic Acid Atoms Solvent Atoms 73 Heterogen Atoms 33
Software Software Software Name Purpose REFMAC refinement Blu-Ice data collection MOSFLM data reduction CCP4 data scaling CCP4 phasing