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Crystal structure of Pim1 with Myricetin
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 277 NA ACETATE, IMIDAZOLE, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.35 63.27
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 98.711 α = 90 b = 98.711 β = 90 c = 80.596 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.10000 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 84.51 99.79 0.129 5.1 5 28657 28657
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.052 99.8 0.702 2.3 4.9 4221
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 84.51 28657 28657 1524 99.79 0.19445 0.19445 0.19322 0.21776 RANDOM 18.881
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.55 0.77 1.55 -2.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 3.049 r_scangle_it 2.452 r_scbond_it 1.418 r_angle_refined_deg 1.361 r_mcangle_it 1.098 r_angle_other_deg 0.823 r_mcbond_it 0.58 r_symmetry_vdw_refined 0.283 r_symmetry_vdw_other 0.263 r_nbd_other 0.24
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 3.049 r_scangle_it 2.452 r_scbond_it 1.418 r_angle_refined_deg 1.361 r_mcangle_it 1.098 r_angle_other_deg 0.823 r_mcbond_it 0.58 r_symmetry_vdw_refined 0.283 r_symmetry_vdw_other 0.263 r_nbd_other 0.24 r_nbd_refined 0.205 r_symmetry_hbond_refined 0.188 r_xyhbond_nbd_refined 0.143 r_chiral_restr 0.087 r_nbtor_other 0.08 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_gen_planes_other 0.003 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2230 Nucleic Acid Atoms Solvent Atoms 192 Heterogen Atoms 38
Software Software Software Name Purpose REFMAC refinement Blu-Ice data collection MOSFLM data reduction CCP4 data scaling CCP4 phasing