☰ Navigation Tabs
Crystal Structure of M11L, Bcl-2 homolog from myxoma virus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 293 sodium citrate, ammonium sulfate, KCl, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 4.36 71.77
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.151 α = 90 b = 73.151 β = 90 c = 186.875 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2005-01-08 M SINGLE WAVELENGTH 2 1 x-ray M MAD 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 ALS 8.3.1 2 SYNCHROTRON ALS BEAMLINE 8.3.1 1.11587, 0.97949, 1.01978 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2.9 30 100 0.09 22.92 7.6 13415 13415 1 1 32.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 2.9 3 100 0.412 4.596 7.1 1296
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.91 30 12692 12692 683 100 0.25114 0.25114 0.24914 0.2303 0.29 0.2731 RANDOM 26.565
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.8 1.9 3.8 -5.69
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.425 r_scangle_it 2.534 r_scbond_it 1.473 r_angle_refined_deg 0.966 r_mcangle_it 0.894 r_symmetry_hbond_refined 0.52 r_mcbond_it 0.431 r_nbd_refined 0.237 r_symmetry_vdw_refined 0.199 r_xyhbond_nbd_refined 0.151
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.425 r_scangle_it 2.534 r_scbond_it 1.473 r_angle_refined_deg 0.966 r_mcangle_it 0.894 r_symmetry_hbond_refined 0.52 r_mcbond_it 0.431 r_nbd_refined 0.237 r_symmetry_vdw_refined 0.199 r_xyhbond_nbd_refined 0.151 r_chiral_restr 0.075 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2118 Nucleic Acid Atoms Solvent Atoms 11 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection HKL-2000 data scaling PHASER phasing