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Crystal structure of Pim1 with Quercetin
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 277 NA ACETATE, IMIDAZOLE, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.31 62.82
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 97.761 α = 90 b = 97.761 β = 90 c = 81.185 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.10000 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.24 84.51 99.18 0.08 0.08 8.5 5.3 22140 22140 24.19
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.24 2.298 96.8 0.534 1.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.24 84.51 20049 20049 1083 99.18 0.18866 0.18866 0.18701 0.22019 RANDOM 24.188
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.66 0.83 1.66 -2.5
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 2.927 r_scangle_it 2.687 r_scbond_it 1.567 r_angle_refined_deg 1.365 r_mcangle_it 1.082 r_angle_other_deg 0.805 r_mcbond_it 0.553 r_symmetry_vdw_other 0.287 r_symmetry_vdw_refined 0.243 r_nbd_other 0.235
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 2.927 r_scangle_it 2.687 r_scbond_it 1.567 r_angle_refined_deg 1.365 r_mcangle_it 1.082 r_angle_other_deg 0.805 r_mcbond_it 0.553 r_symmetry_vdw_other 0.287 r_symmetry_vdw_refined 0.243 r_nbd_other 0.235 r_nbd_refined 0.197 r_xyhbond_nbd_refined 0.176 r_symmetry_hbond_refined 0.105 r_chiral_restr 0.084 r_nbtor_other 0.081 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_gen_planes_other 0.005 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2238 Nucleic Acid Atoms Solvent Atoms 111 Heterogen Atoms 54
Software Software Software Name Purpose REFMAC refinement Blu-Ice data collection MOSFLM data reduction CCP4 data scaling CCP4 phasing