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Crystal structure of a duf1048 protein with a left-handed superhelix fold (bce_3448) from bacillus cereus atcc 10987 at 2.05 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP, NANODROP 6 277 0.8M (NH4)2SO4, 0.1M MES pH 6.0, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.78 55.71
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.202 α = 90 b = 61.202 β = 90 c = 101.702 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD Adjustable focusing mirrors in K-B geometry 2006-10-19 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D 0.97921, 0.97942, 0.94645 APS 23-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.999 29.298 99.8 0.071 0.071 6.4 5.2 14352 31.23
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.05 2.1 99.3 0.635 0.635 1.1 5.1 1040
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.05 29.298 14319 723 99.82 0.186 0.184 0.1919 0.227 0.23 RANDOM 39.551
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.87 0.43 0.87 -1.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.524 r_dihedral_angle_3_deg 14.636 r_dihedral_angle_4_deg 9.518 r_scangle_it 8.363 r_scbond_it 6.955 r_dihedral_angle_1_deg 5.699 r_mcangle_it 3.489 r_mcbond_it 2.487 r_angle_refined_deg 1.501 r_angle_other_deg 0.858
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.524 r_dihedral_angle_3_deg 14.636 r_dihedral_angle_4_deg 9.518 r_scangle_it 8.363 r_scbond_it 6.955 r_dihedral_angle_1_deg 5.699 r_mcangle_it 3.489 r_mcbond_it 2.487 r_angle_refined_deg 1.501 r_angle_other_deg 0.858 r_mcbond_other 0.658 r_nbd_refined 0.222 r_symmetry_vdw_other 0.222 r_nbtor_refined 0.192 r_symmetry_vdw_refined 0.18 r_nbd_other 0.169 r_xyhbond_nbd_refined 0.154 r_symmetry_hbond_refined 0.097 r_chiral_restr 0.093 r_nbtor_other 0.087 r_bond_refined_d 0.018 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1263 Nucleic Acid Atoms Solvent Atoms 106 Heterogen Atoms 23
Software Software Software Name Purpose MolProbity model building SHELX phasing REFMAC refinement SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction CCP4 data scaling SHELXD phasing autoSHARP phasing