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Crystal structure of a protein AF_0751 from Archaeoglobus fulgidus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7.5 294 100mM Hepes pH 7.5, 30% MPD, 200mM tri-sodium citrate dihydrate, Vapor diffusion, temperature 294K
Crystal Properties Matthews coefficient Solvent content 2 38.41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.294 α = 90 b = 55.89 β = 90 c = 108.784 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 77 CCD MAR CCD 165 mm 2006-10-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.97958 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 19.49 97.7 0.109 0.109 18 12.6 17078 16685 35.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.32 91.3 0.504 0.504 3.7 8.8 2227
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.2 19.035 17077 16683 850 97.69 0.233 0.23 0.2246 0.292 0.2851 RANDOM 45.209
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.48 -5.93 6.41
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.331 r_dihedral_angle_3_deg 16.958 r_dihedral_angle_4_deg 13.875 r_dihedral_angle_1_deg 6.542 r_scangle_it 2.627 r_scbond_it 1.565 r_angle_refined_deg 1.439 r_mcangle_it 1.208 r_mcbond_it 0.675 r_nbtor_refined 0.306
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.331 r_dihedral_angle_3_deg 16.958 r_dihedral_angle_4_deg 13.875 r_dihedral_angle_1_deg 6.542 r_scangle_it 2.627 r_scbond_it 1.565 r_angle_refined_deg 1.439 r_mcangle_it 1.208 r_mcbond_it 0.675 r_nbtor_refined 0.306 r_nbd_refined 0.215 r_symmetry_vdw_refined 0.177 r_xyhbond_nbd_refined 0.146 r_symmetry_hbond_refined 0.127 r_chiral_restr 0.123 r_bond_refined_d 0.01 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2588 Nucleic Acid Atoms Solvent Atoms 91 Heterogen Atoms
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction MAR345 data collection MOSFLM data reduction CCP4 data scaling SHELXD phasing