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Protein of Unknown Function (DUF1244) from Sinorhizobium meliloti
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 295 1.4 M Sodium citrate, 0.1 M HEPES pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.48 50.43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 80.994 α = 90 b = 80.994 β = 90 c = 64.708 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD SBC-3 mirrors 2006-10-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.97904 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.12 35.07 98.4 0.088 6.6 16.3 13992 13992
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.12 2.2 95.7 0.554 1.92 11.4 1320
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.12 35.07 12547 12547 1382 98.13 0.21407 0.21407 0.20859 0.2847 0.26288 0.3223 RANDOM 53.415
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.29 0.65 1.29 -1.94
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.439 r_dihedral_angle_3_deg 20.771 r_dihedral_angle_4_deg 19.937 r_dihedral_angle_1_deg 5.953 r_scangle_it 4.005 r_scbond_it 2.604 r_mcangle_it 1.673 r_angle_refined_deg 1.556 r_mcbond_it 1.109 r_nbtor_refined 0.305
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.439 r_dihedral_angle_3_deg 20.771 r_dihedral_angle_4_deg 19.937 r_dihedral_angle_1_deg 5.953 r_scangle_it 4.005 r_scbond_it 2.604 r_mcangle_it 1.673 r_angle_refined_deg 1.556 r_mcbond_it 1.109 r_nbtor_refined 0.305 r_symmetry_vdw_refined 0.281 r_symmetry_hbond_refined 0.236 r_nbd_refined 0.234 r_xyhbond_nbd_refined 0.169 r_chiral_restr 0.126 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1422 Nucleic Acid Atoms Solvent Atoms 117 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-3000 data collection HKL-3000 data reduction HKL-3000 data scaling HKL-3000 phasing SHELXD phasing SHELXE model building MLPHARE phasing DM phasing SOLVE phasing RESOLVE phasing CCP4 phasing ARP/wARP model building O model building Coot model building