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Crystal structure of a protein member of the upf0052 family (bh3568) from bacillus halodurans at 2.60 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP, NANODROP 8.5 277 40.0% polyethylene glycol 400, 0.2M lithium sulfate, 0.1M TRIS pH 8.5, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.1 60.27
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.43 α = 90 b = 143.64 β = 90 c = 233.68 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2006-08-31 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 29.437 99.6 0.083 15.41 54381 45.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.6 2.69 97.5 0.401 2.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.6 29.437 54312 2764 99.68 0.19 0.188 0.1964 0.224 0.2328 RANDOM 36.271
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.86 0.2 0.66
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.56 r_dihedral_angle_4_deg 18.814 r_dihedral_angle_3_deg 15.916 r_scangle_it 6.797 r_dihedral_angle_1_deg 5.492 r_scbond_it 4.899 r_mcangle_it 2.6 r_mcbond_it 1.566 r_angle_refined_deg 1.5 r_angle_other_deg 0.92
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.56 r_dihedral_angle_4_deg 18.814 r_dihedral_angle_3_deg 15.916 r_scangle_it 6.797 r_dihedral_angle_1_deg 5.492 r_scbond_it 4.899 r_mcangle_it 2.6 r_mcbond_it 1.566 r_angle_refined_deg 1.5 r_angle_other_deg 0.92 r_symmetry_vdw_refined 0.342 r_mcbond_other 0.238 r_nbd_refined 0.216 r_nbd_other 0.188 r_nbtor_refined 0.175 r_symmetry_vdw_other 0.174 r_xyhbond_nbd_refined 0.17 r_symmetry_hbond_refined 0.098 r_nbtor_other 0.086 r_xyhbond_nbd_other 0.081 r_chiral_restr 0.072 r_bond_refined_d 0.014 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9095 Nucleic Acid Atoms Solvent Atoms 280 Heterogen Atoms 216
Software Software Software Name Purpose MolProbity model building SHELX phasing REFMAC refinement XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction SHELXD phasing autoSHARP phasing