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Crystal structure of Dienelactone hydrolase (YP_324580.1) from Anabaena variabilis ATCC 29413 at 1.92 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP, NANODROP 9.5 277 1.26M (NH4)2SO4, 0.2M NaCl, 0.1M CHES pH 9.5, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.1 41.41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.895 α = 90 b = 62.465 β = 90 c = 67.998 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD Adjustable focusing mirrors in K-B geometry 2006-10-19 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D 0.94645, 0.97942, 0.97921 APS 23-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.92 39.163 92 0.07 9.6 3.9 14877 20.056
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.92 1.99 81 0.275 2.857 2.6 1273
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.92 39.163 14828 740 91.85 0.186 0.183 0.1933 0.238 0.2446 RANDOM 26.006
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.74 -1.24 -1.5
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.827 r_dihedral_angle_4_deg 15.158 r_dihedral_angle_3_deg 10.201 r_scangle_it 6.99 r_scbond_it 5.41 r_dihedral_angle_1_deg 3.66 r_mcangle_it 2.977 r_mcbond_it 2.115 r_angle_refined_deg 1.688 r_angle_other_deg 0.917
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.827 r_dihedral_angle_4_deg 15.158 r_dihedral_angle_3_deg 10.201 r_scangle_it 6.99 r_scbond_it 5.41 r_dihedral_angle_1_deg 3.66 r_mcangle_it 2.977 r_mcbond_it 2.115 r_angle_refined_deg 1.688 r_angle_other_deg 0.917 r_mcbond_other 0.62 r_symmetry_vdw_other 0.226 r_nbd_refined 0.214 r_xyhbond_nbd_refined 0.197 r_nbtor_refined 0.175 r_nbd_other 0.167 r_symmetry_hbond_refined 0.143 r_symmetry_vdw_refined 0.103 r_chiral_restr 0.092 r_nbtor_other 0.083 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1612 Nucleic Acid Atoms Solvent Atoms 168 Heterogen Atoms 18
Software Software Software Name Purpose MolProbity model building SHELX phasing REFMAC refinement SCALEPACK data scaling PDB_EXTRACT data extraction DENZO data reduction SHELXD phasing autoSHARP phasing