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Spectroscopic and Structural Study of the Heterotropic Linkage between Halide and Proton Ion Binding to Gfp Proteins: E2(GFP)-Cl Complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2H6V pdb entry 2H6V
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5 14% (W/V) PEG 3350, 100 MM NH4 ACETATE, 0.2 M NH4CL, PH 5.0, VAPOR DIFFUSION, HANGING DROP
Crystal Properties Matthews coefficient Solvent content 2.03 39.51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.989 α = 90 b = 62.979 β = 90 c = 69.39 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 28.684 97 0.074 0.074 5.8 7.1 38294 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.45 1.53 95.8 0.338 0.338 2.2 6.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT pdb entry 2H6V 1.45 28.68 36954 1951 96.52 0.17805 0.17732 0.1853 0.19157 0.1999 RANDOM 12.127
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.02 -0.39 0.41
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.914 r_dihedral_angle_3_deg 15.137 r_dihedral_angle_1_deg 7.527 r_dihedral_angle_4_deg 7.133 r_scangle_it 2.472 r_scbond_it 1.789 r_angle_other_deg 1.518 r_angle_refined_deg 1.4 r_mcangle_it 1.121 r_mcbond_it 0.784
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.914 r_dihedral_angle_3_deg 15.137 r_dihedral_angle_1_deg 7.527 r_dihedral_angle_4_deg 7.133 r_scangle_it 2.472 r_scbond_it 1.789 r_angle_other_deg 1.518 r_angle_refined_deg 1.4 r_mcangle_it 1.121 r_mcbond_it 0.784 r_xyhbond_nbd_refined 0.273 r_nbd_refined 0.262 r_symmetry_vdw_other 0.239 r_nbd_other 0.198 r_symmetry_hbond_refined 0.188 r_nbtor_refined 0.175 r_symmetry_vdw_refined 0.153 r_mcbond_other 0.135 r_nbtor_other 0.088 r_chiral_restr 0.074 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1911 Nucleic Acid Atoms Solvent Atoms 217 Heterogen Atoms 3
Software Software Software Name Purpose MOLREP phasing REFMAC refinement ADSC data collection MOSFLM data reduction