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Structure of full length GRP94 with ADP bound
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.4 291 26-32% v/v PEG400, 150-225mM MgCl2, and 0.1M Bis-tris propane, pH 6.4, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.62 53.08
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 99.08 α = 90 b = 108.85 β = 90 c = 148.98 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2006-06-09 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD ADSC QUANTUM 210 2006-06-09 M MAD 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.1 0.97950 ALS 8.2.1 2 SYNCHROTRON ALS BEAMLINE 8.2.1 0.97950, 0.97960, 0.97180 ALS 8.2.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2.45 50 99.6 0.064 15.6 4.8 59883 59644 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 2.45 2.5 97.7 0.758 2 4 3474
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.45 20 59883 56551 2970 99.59 0.25015 0.24756 0.2642 0.29947 0.304 RANDOM 30.563
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.26 -0.97 -2.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 25.041 r_dihedral_angle_4_deg 11.161 r_dihedral_angle_3_deg 10.648 r_dihedral_angle_1_deg 2.474 r_scangle_it 1.506 r_angle_refined_deg 1.356 r_scbond_it 0.96 r_mcangle_it 0.712 r_mcbond_it 0.404 r_nbtor_refined 0.311
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 25.041 r_dihedral_angle_4_deg 11.161 r_dihedral_angle_3_deg 10.648 r_dihedral_angle_1_deg 2.474 r_scangle_it 1.506 r_angle_refined_deg 1.356 r_scbond_it 0.96 r_mcangle_it 0.712 r_mcbond_it 0.404 r_nbtor_refined 0.311 r_metal_ion_refined 0.297 r_xyhbond_nbd_refined 0.201 r_symmetry_hbond_refined 0.199 r_nbd_refined 0.174 r_symmetry_vdw_refined 0.156 r_chiral_restr 0.094 r_bond_refined_d 0.009 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9216 Nucleic Acid Atoms Solvent Atoms 260 Heterogen Atoms 58
Software Software Software Name Purpose REFMAC refinement ADSC data collection XDS data reduction XDS data scaling SHELXCD phasing SHELXE model building