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Structure of Middle plus C-terminal domains (M+C) of GRP94
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 291 13-18% v/v 2-methyl-2,4-pentanediol (MPD), 2-5% w/v PEG 6000, and 0.1M bis-tris, pH 6.0 , VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.95 58.28
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 131.3 α = 90 b = 129.54 β = 99.91 c = 184.78 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2006-04-08 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2006-04-09 M MAD 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 0.97931 APS 22-ID 2 SYNCHROTRON APS BEAMLINE 22-ID 0.97931, 0.97942, 0.97175 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 3.2 45.6 99.7 0.073 14 5.1 100725 100423 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 3.2 3.28 99.4 0.483 2 3.9 6893
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 3.2 20 95320 95073 5004 99.74 0.28492 0.28445 0.2726 0.29373 0.2852 RANDOM 150.132
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.28 2.46 3.46 -2.89
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 23.883 r_dihedral_angle_4_deg 13.787 r_dihedral_angle_3_deg 10.857 r_dihedral_angle_1_deg 2.212 r_angle_refined_deg 1.307 r_symmetry_hbond_refined 0.647 r_symmetry_vdw_refined 0.505 r_nbtor_refined 0.317 r_nbd_refined 0.195 r_xyhbond_nbd_refined 0.167
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 23.883 r_dihedral_angle_4_deg 13.787 r_dihedral_angle_3_deg 10.857 r_dihedral_angle_1_deg 2.212 r_angle_refined_deg 1.307 r_symmetry_hbond_refined 0.647 r_symmetry_vdw_refined 0.505 r_nbtor_refined 0.317 r_nbd_refined 0.195 r_xyhbond_nbd_refined 0.167 r_chiral_restr 0.093 r_bond_refined_d 0.009 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 33009 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MAR345 data collection XDS data reduction SCALA data scaling XDS data scaling SHELXCD phasing SHELXE model building