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Crystal structure of iron-regulated surface determinant protein A from Staphylococcus aureus- targeted domain 47...188
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 3.5 0.1 M Citrate, 2.0 M Ammonium sulfate, pH 3.5, VAPOR DIFFUSION, SITTING DROP
Crystal Properties Matthews coefficient Solvent content 3.01 59.13
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.186 α = 90 b = 82.141 β = 90 c = 91.279 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2006-08-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 50 99.7 0.08 46.2 7 26206 26135 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.6 1.66 98.4 0.434 0.0453 5.7 2534
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.6 41.07 24719 24719 1324 99.29 0.16869 0.16869 0.16699 0.2064 0.20098 0.2394 RANDOM 20.375
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.17 0.22 -0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.544 r_dihedral_angle_3_deg 13.665 r_dihedral_angle_4_deg 12.531 r_dihedral_angle_1_deg 8.237 r_scangle_it 4.915 r_scbond_it 3.636 r_mcangle_it 2.391 r_mcbond_it 1.683 r_angle_refined_deg 1.5 r_nbtor_refined 0.303
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.544 r_dihedral_angle_3_deg 13.665 r_dihedral_angle_4_deg 12.531 r_dihedral_angle_1_deg 8.237 r_scangle_it 4.915 r_scbond_it 3.636 r_mcangle_it 2.391 r_mcbond_it 1.683 r_angle_refined_deg 1.5 r_nbtor_refined 0.303 r_nbd_refined 0.221 r_symmetry_vdw_refined 0.212 r_xyhbond_nbd_refined 0.166 r_chiral_restr 0.116 r_symmetry_hbond_refined 0.111 r_bond_refined_d 0.014 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1082 Nucleic Acid Atoms Solvent Atoms 130 Heterogen Atoms 9
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-3000 data reduction HKL-3000 data scaling HKL-3000 phasing