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CRYSTAL STRUCTURE OF A PUTATIVE HD SUPERFAMILY HYDROLASE (BH1327) FROM BACILLUS HALODURANS AT 1.90 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP, NANODROP 277 0.2M potassium nitrate, 20.0% polyethylene glycol 3350, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.04 59.58
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.83 α = 90 b = 166.51 β = 90 c = 73.41 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 1m long Rh coated bent cylindrical mirror forhorizontal and vertical focussing 2006-11-10 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD MARMOSAIC 300 mm CCD Adjustable focusing mirrors in K-B geometry 2006-10-20 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL1-5 SSRL BL1-5 2 SYNCHROTRON APS BEAMLINE 23-ID-D 0.97942, 0.97921, 0.94645 APS 23-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.9 28.88 93.6 0.086 10.48 41676 31.858
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 1.9 1.97 78.9 0.518 2.1 6555
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.9 28.88 41665 2112 98.62 0.176 0.174 0.1806 0.223 0.2259 RANDOM 30.733
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.05 -2.83 1.77
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.386 r_dihedral_angle_4_deg 19.371 r_dihedral_angle_3_deg 13.296 r_scangle_it 7.188 r_scbond_it 5.401 r_dihedral_angle_1_deg 4.311 r_mcangle_it 3.038 r_mcbond_it 2.227 r_angle_refined_deg 1.605 r_angle_other_deg 1.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.386 r_dihedral_angle_4_deg 19.371 r_dihedral_angle_3_deg 13.296 r_scangle_it 7.188 r_scbond_it 5.401 r_dihedral_angle_1_deg 4.311 r_mcangle_it 3.038 r_mcbond_it 2.227 r_angle_refined_deg 1.605 r_angle_other_deg 1.18 r_mcbond_other 0.557 r_nbd_refined 0.219 r_symmetry_hbond_refined 0.202 r_nbtor_refined 0.18 r_nbd_other 0.17 r_symmetry_vdw_other 0.169 r_xyhbond_nbd_refined 0.139 r_symmetry_vdw_refined 0.122 r_metal_ion_refined 0.096 r_chiral_restr 0.094 r_nbtor_other 0.084 r_bond_refined_d 0.016 r_gen_planes_refined 0.006 r_bond_other_d 0.003 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2997 Nucleic Acid Atoms Solvent Atoms 325 Heterogen Atoms 119
Software Software Software Name Purpose MolProbity model building SHARP phasing REFMAC refinement XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction SHELX phasing