☰ Navigation Tabs
Crystal Structure of Human FtsJ homolog 2 (E.coli) protein in complex with S-adenosylmethionine
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1EIZ PDB entry 1EIZ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 297 20% PEG 3350, 0.2M Potassium phosphate, VAPOR DIFFUSION, HANGING DROP, temperature 297K
Crystal Properties Matthews coefficient Solvent content 2.22 44.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 102.022 α = 90 b = 102.022 β = 90 c = 37.068 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2006-10-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 1.00000 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.76 50 98.5 0.048 0.048 16.2 6.2 37711 37711 33.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.76 1.79 99.9 0.629 0.629 1.65 5.5 1860
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 1EIZ 1.76 50 36889 36889 784 98.39 0.22753 0.22753 0.22639 0.2239 0.28113 0.2754 RANDOM 27.895
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.26 -0.26 0.51
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.223 r_dihedral_angle_4_deg 17.308 r_dihedral_angle_3_deg 14.338 r_dihedral_angle_1_deg 6.43 r_scangle_it 3.649 r_scbond_it 2.613 r_mcangle_it 1.715 r_angle_refined_deg 1.473 r_mcbond_it 1.169 r_nbtor_refined 0.309
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.223 r_dihedral_angle_4_deg 17.308 r_dihedral_angle_3_deg 14.338 r_dihedral_angle_1_deg 6.43 r_scangle_it 3.649 r_scbond_it 2.613 r_mcangle_it 1.715 r_angle_refined_deg 1.473 r_mcbond_it 1.169 r_nbtor_refined 0.309 r_nbd_refined 0.227 r_symmetry_vdw_refined 0.164 r_symmetry_hbond_refined 0.158 r_xyhbond_nbd_refined 0.149 r_chiral_restr 0.119 r_bond_refined_d 0.02 r_gen_planes_refined 0.01 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2787 Nucleic Acid Atoms Solvent Atoms 201 Heterogen Atoms 54
Software Software Software Name Purpose REFMAC refinement JDirector data collection HKL-2000 data reduction HKL-2000 data scaling PHASER phasing