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Crystal structure of the ankyrin repeat domain of TRPV1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5 298 0.033MM PROTEIN, 5% PEG8000, 0.1M SODIUM CITRATE, 5MM ATP, pH 5.00, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 4.77 74.23
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 124.721 α = 90 b = 124.721 β = 90 c = 62.767 γ = 120
Symmetry Space Group P 3 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV 2005-08-18 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.5418, 0.97907, 0.97922, 0.99298
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.2 34 98.7 9412 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 3.2 3.31 99.9 0.091 4.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 3.2 20 8450 935 98.9 0.24 0.235 0.2786 0.286 0.3155 RANDOM 115.26
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.42 1.21 2.42 -3.64
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.984 r_dihedral_angle_4_deg 22.189 r_dihedral_angle_3_deg 20.854 r_dihedral_angle_1_deg 5.698 r_angle_refined_deg 1.237 r_scangle_it 0.815 r_scbond_it 0.479 r_mcangle_it 0.403 r_nbtor_refined 0.3 r_symmetry_hbond_refined 0.279
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.984 r_dihedral_angle_4_deg 22.189 r_dihedral_angle_3_deg 20.854 r_dihedral_angle_1_deg 5.698 r_angle_refined_deg 1.237 r_scangle_it 0.815 r_scbond_it 0.479 r_mcangle_it 0.403 r_nbtor_refined 0.3 r_symmetry_hbond_refined 0.279 r_nbd_refined 0.231 r_mcbond_it 0.217 r_symmetry_vdw_refined 0.179 r_xyhbond_nbd_refined 0.166 r_chiral_restr 0.072 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1893 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 31
Software Software Software Name Purpose SOLVE phasing REFMAC refinement