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Structure of NTD2 domain of the human TAF5 subunit of TFIID
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7.1 295 0.1M Tris-HCl, 0.6M calcium chloride, 20% PEG 4000, pH 7.1, VAPOR DIFFUSION, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.47 50.22
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 93.62 α = 90 b = 61.829 β = 105.16 c = 133.357 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD ADSC QUANTUM 210 KOHZU: Double Crystal Si(111) 2005-10-25 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 0.9797, 1.0199 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 64.4 97.8 0.102 9.3 4.3 78392 76736 2 2 38.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.2 97.9 0.065 2.5 4.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.17 64.42 76736 72912 3837 97.89 0.21507 0.21257 0.221 0.26252 0.2672 RANDOM 35.522
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.441 r_dihedral_angle_3_deg 12.129 r_dihedral_angle_4_deg 10.597 r_dihedral_angle_1_deg 4.379 r_angle_refined_deg 0.722 r_angle_other_deg 0.6 r_symmetry_vdw_refined 0.234 r_symmetry_vdw_other 0.221 r_symmetry_hbond_refined 0.221 r_nbd_refined 0.212
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.441 r_dihedral_angle_3_deg 12.129 r_dihedral_angle_4_deg 10.597 r_dihedral_angle_1_deg 4.379 r_angle_refined_deg 0.722 r_angle_other_deg 0.6 r_symmetry_vdw_refined 0.234 r_symmetry_vdw_other 0.221 r_symmetry_hbond_refined 0.221 r_nbd_refined 0.212 r_xyhbond_nbd_refined 0.212 r_nbtor_refined 0.193 r_nbd_other 0.176 r_metal_ion_refined 0.127 r_symmetry_metal_ion_refined 0.118 r_nbtor_other 0.09 r_chiral_restr 0.047 r_bond_refined_d 0.004 r_gen_planes_refined 0.002 r_gen_planes_other 0.001 r_bond_other_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9986 Nucleic Acid Atoms Solvent Atoms 521 Heterogen Atoms 8
Software Software Software Name Purpose REFMAC refinement ADSC data collection MOSFLM data reduction CCP4 data scaling MLPHARE phasing