☰ Navigation Tabs
Crystal structure of XisI protein-like (YP_323822.1) from Anabaena Variabilis ATCC 29413 at 1.85 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP, NANODROP 7 277 0.2M NaCl, 30.0% PEG-3000, 0.1M TRIS, pH 7.0, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.85 56.91
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.522 α = 90 b = 62.522 β = 90 c = 137.558 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2006-09-13 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 0.9792, 0.9795, 1.0000 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 29.025 99.9 0.129 0.129 5.3 8.4 14324
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.9 99.8 0.016 0.01628 0.5 8.8 1026
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.85 29.025 14279 718 99.88 0.193 0.192 0.1973 0.225 0.2336 RANDOM 20.411
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.78 0.39 0.78 -1.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.037 r_dihedral_angle_4_deg 19.939 r_dihedral_angle_3_deg 15.245 r_dihedral_angle_1_deg 8.051 r_scangle_it 7.958 r_scbond_it 5.931 r_mcangle_it 3.582 r_mcbond_it 2.546 r_angle_refined_deg 1.555 r_angle_other_deg 1.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.037 r_dihedral_angle_4_deg 19.939 r_dihedral_angle_3_deg 15.245 r_dihedral_angle_1_deg 8.051 r_scangle_it 7.958 r_scbond_it 5.931 r_mcangle_it 3.582 r_mcbond_it 2.546 r_angle_refined_deg 1.555 r_angle_other_deg 1.001 r_mcbond_other 0.599 r_symmetry_vdw_other 0.286 r_nbd_refined 0.208 r_nbd_other 0.197 r_nbtor_refined 0.183 r_symmetry_hbond_refined 0.175 r_xyhbond_nbd_refined 0.161 r_symmetry_vdw_refined 0.119 r_chiral_restr 0.103 r_nbtor_other 0.088 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 922 Nucleic Acid Atoms Solvent Atoms 76 Heterogen Atoms
Software Software Software Name Purpose MolProbity model building SHELX phasing REFMAC refinement SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction CCP4 data scaling SHELXD phasing SOLVE phasing