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Short chain dehydrogenase from Pseudomonas aeruginosa
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 298 0.1M HEPES pH 7.5-8.5, 22% PEG4000, 0.2-0.3M ammonium sulphate, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.06 40.17
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.982 α = 90 b = 107.92 β = 102.92 c = 71.457 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2001-12-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 OTHER
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 30 96 0.072 18.7 5 42528 38911
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.38 95 0.163 4.2 4194
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.3 23 42528 38911 2071 95.97 0.16632 0.16354 0.163 0.21887 0.2168 RANDOM 24.751
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.85 1.08 -0.66 -1.71
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.644 r_dihedral_angle_4_deg 17.49 r_dihedral_angle_3_deg 16.209 r_dihedral_angle_1_deg 5.925 r_scangle_it 2.244 r_scbond_it 1.456 r_angle_refined_deg 1.367 r_mcangle_it 0.831 r_mcbond_it 0.527 r_symmetry_hbond_refined 0.302
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.644 r_dihedral_angle_4_deg 17.49 r_dihedral_angle_3_deg 16.209 r_dihedral_angle_1_deg 5.925 r_scangle_it 2.244 r_scbond_it 1.456 r_angle_refined_deg 1.367 r_mcangle_it 0.831 r_mcbond_it 0.527 r_symmetry_hbond_refined 0.302 r_nbtor_refined 0.301 r_nbd_refined 0.208 r_xyhbond_nbd_refined 0.138 r_symmetry_vdw_refined 0.12 r_chiral_restr 0.099 r_bond_refined_d 0.011 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6938 Nucleic Acid Atoms Solvent Atoms 415 Heterogen Atoms 20
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling CNS phasing