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Crystal structure of protein AF1396 from Archaeoglobus fulgidus, Pfam DUF98
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6.5 294 100mM Bis-Tris, 30% PEG MME 550, 50mM calcium chloride, pH 6.5, VAPOR DIFFUSION, temperature 294K
Crystal Properties Matthews coefficient Solvent content 2.31 46.86
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.131 α = 90 b = 128.647 β = 90 c = 129.921 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 77 CCD MAR CCD 165 mm 2006-11-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.97958 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 19.881 99.4 0.165 0.165 13.5 8.6 57882 57535 27.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.32 98.3 0.737 0.737 2.6 6.8 8204
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.2 20 57801 57472 2874 99.43 0.211 0.208 0.2096 0.276 0.2761 RANDOM 35.351
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.33 1.41 -1.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.839 r_dihedral_angle_4_deg 19.893 r_dihedral_angle_3_deg 16.85 r_dihedral_angle_1_deg 7.417 r_scangle_it 3.515 r_scbond_it 2.108 r_angle_refined_deg 1.413 r_mcangle_it 1.253 r_mcbond_it 0.785 r_nbtor_refined 0.306
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.839 r_dihedral_angle_4_deg 19.893 r_dihedral_angle_3_deg 16.85 r_dihedral_angle_1_deg 7.417 r_scangle_it 3.515 r_scbond_it 2.108 r_angle_refined_deg 1.413 r_mcangle_it 1.253 r_mcbond_it 0.785 r_nbtor_refined 0.306 r_symmetry_vdw_refined 0.267 r_symmetry_hbond_refined 0.223 r_nbd_refined 0.215 r_xyhbond_nbd_refined 0.165 r_chiral_restr 0.093 r_bond_refined_d 0.012 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7809 Nucleic Acid Atoms Solvent Atoms 489 Heterogen Atoms
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction MAR345 data collection MOSFLM data reduction CCP4 data scaling SHELXD phasing