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Crystal structure of fdxN element excision controlling factor XisI (YP_321976.1) from Anabaena Variabilis ATCC 29413 at 2.19 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP, NANODROP 6 277 30.0% PEG-6000, 0.1M MES, pH 6.0, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.86 56.94
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 122.44 α = 90 b = 122.44 β = 90 c = 77.076 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2006-09-13 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 1.0000, 0.9795, 0.9792 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 62.38 100 0.107 0.107 12.4 10.4 18064 49.03
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.19 2.31 100 1.375 1.375 1.8 10.7 2564
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.19 77.152 18015 917 99.88 0.203 0.201 0.244 0.2829 RANDOM 45.913
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.51 0.25 0.51 -0.76
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.127 r_dihedral_angle_4_deg 10.615 r_dihedral_angle_3_deg 10.47 r_scangle_it 5.85 r_scbond_it 4.351 r_dihedral_angle_1_deg 3.223 r_mcangle_it 2.64 r_mcbond_it 1.94 r_angle_refined_deg 1.895 r_angle_other_deg 1.614
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.127 r_dihedral_angle_4_deg 10.615 r_dihedral_angle_3_deg 10.47 r_scangle_it 5.85 r_scbond_it 4.351 r_dihedral_angle_1_deg 3.223 r_mcangle_it 2.64 r_mcbond_it 1.94 r_angle_refined_deg 1.895 r_angle_other_deg 1.614 r_mcbond_other 0.356 r_nbd_refined 0.15 r_nbtor_refined 0.137 r_symmetry_vdw_other 0.134 r_nbd_other 0.131 r_symmetry_vdw_refined 0.122 r_chiral_restr 0.116 r_xyhbond_nbd_refined 0.115 r_symmetry_hbond_refined 0.077 r_nbtor_other 0.066 r_bond_refined_d 0.016 r_gen_planes_refined 0.007 r_bond_other_d 0.005 r_gen_planes_other 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1754 Nucleic Acid Atoms Solvent Atoms 57 Heterogen Atoms
Software Software Software Name Purpose MolProbity model building SHELX phasing REFMAC refinement SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction CCP4 data scaling SHELXD phasing autoSHARP phasing