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PEPTIDYLPROLYL ISOMERASE FROM E. COLI
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1LOP PDB ENTRY 1LOP (COORDS RECEIVED FROM AUTHORS IN ADVANCE OF DEPOSITION)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 CRYSTALLIZED FROM 100 MM TRIS PH 8.5, 0.2 M SODIUM ACETATE, 30% PEG 3.4K
Crystal Properties Matthews coefficient Solvent content 2.14 42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.7 α = 90 b = 68.2 β = 90 c = 102 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 291 IMAGE PLATE RIGAKU 1996-06-26 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH2R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 91.3 0.057 9966
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.5 91.5
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRY 1LOP (COORDS RECEIVED FROM AUTHORS IN ADVANCE OF DEPOSITION) 2.1 6 8404 93.5 0.16 0.16 0.1571 24.5
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.0254 -7.5515 -7.5515
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 26.17 x_angle_deg 2.003 x_improper_angle_d 1.778 x_bond_d 0.02 x_bond_d_na x_bond_d_prot x_angle_d x_angle_d_na x_angle_d_prot x_angle_deg_na
RMS Deviations Key Refinement Restraint Deviation x_dihedral_angle_d 26.17 x_angle_deg 2.003 x_improper_angle_d 1.778 x_bond_d 0.02 x_bond_d_na x_bond_d_prot x_angle_d x_angle_d_na x_angle_d_prot x_angle_deg_na x_angle_deg_prot x_dihedral_angle_d_na x_dihedral_angle_d_prot x_improper_angle_d_na x_improper_angle_d_prot x_mcbond_it x_mcangle_it x_scbond_it x_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1217 Nucleic Acid Atoms Solvent Atoms 89 Heterogen Atoms
Software Software Software Name Purpose X-PLOR model building X-PLOR refinement RIGAKU data reduction RIGAKU data scaling X-PLOR phasing