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Crystal structure of thioesterase superfamily (YP_509914.1) from Jannaschia Sp. CCS1 at 2.00 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP, NANODROP 9 277 65.0% MPD, 0.1M Bicine, pH 9.0, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.19 61.45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.401 α = 90 b = 78.401 β = 90 c = 151.418 γ = 90
Symmetry Space Group P 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD Adjustable focusing mirrors in K-B geometry 2006-10-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D APS 23-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 28.796 99.6 0.193 0.193 10 7.2 32500 23.96
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.05 100 1.385 1.385 1.6 7.2 2368
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2 28.796 32500 1648 99.29 0.157 0.155 0.1681 0.187 0.1975 RANDOM 26.852
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.43 0.43 -0.87
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.195 r_dihedral_angle_4_deg 16.108 r_dihedral_angle_3_deg 11.982 r_scangle_it 6.947 r_dihedral_angle_1_deg 6.33 r_scbond_it 4.899 r_mcangle_it 3.095 r_mcbond_it 2.089 r_angle_refined_deg 1.597 r_angle_other_deg 0.834
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.195 r_dihedral_angle_4_deg 16.108 r_dihedral_angle_3_deg 11.982 r_scangle_it 6.947 r_dihedral_angle_1_deg 6.33 r_scbond_it 4.899 r_mcangle_it 3.095 r_mcbond_it 2.089 r_angle_refined_deg 1.597 r_angle_other_deg 0.834 r_mcbond_other 0.771 r_symmetry_vdw_other 0.282 r_nbd_refined 0.207 r_nbd_other 0.195 r_nbtor_refined 0.185 r_symmetry_vdw_refined 0.172 r_symmetry_hbond_refined 0.168 r_xyhbond_nbd_refined 0.167 r_chiral_restr 0.094 r_nbtor_other 0.086 r_bond_refined_d 0.016 r_gen_planes_refined 0.008 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2485 Nucleic Acid Atoms Solvent Atoms 221 Heterogen Atoms 40
Software Software Software Name Purpose MolProbity model building SHELX phasing REFMAC refinement SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction CCP4 data scaling SHELXD phasing autoSHARP phasing