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Structure of the Glutathione Transferase from Ochrobactrum anthropi in complex with glutathione
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1A0F PDB ENTRY 1A0F
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 294 2.0 M Ammonium Sulphate, 0.1 M Tris pH 7.0, 0.2 M lithium sulphate, VAPOR DIFFUSION, HANGING DROP, temperature 294K
Crystal Properties Matthews coefficient Solvent content 2.43 49.39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.765 α = 90 b = 58.765 β = 90 c = 212.323 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2005-07-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.934 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.095 50.64 99.9 0.07 11.8 13.2 13632 13632 1 26.251
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.095 2.18 99.8 0.335 8.41 1312
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1A0F 2.095 50.64 2.1 13632 12924 676 99.79 0.18955 0.18955 0.18744 0.2009 0.23181 0.2353 RANDOM 15.305
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.97 0.48 0.97 -1.45
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 9.262 r_scangle_it 2.765 r_scbond_it 1.692 r_angle_refined_deg 1.307 r_mcangle_it 1.094 r_angle_other_deg 0.841 r_mcbond_it 0.575 r_symmetry_vdw_refined 0.341 r_symmetry_vdw_other 0.314 r_nbd_other 0.248
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 9.262 r_scangle_it 2.765 r_scbond_it 1.692 r_angle_refined_deg 1.307 r_mcangle_it 1.094 r_angle_other_deg 0.841 r_mcbond_it 0.575 r_symmetry_vdw_refined 0.341 r_symmetry_vdw_other 0.314 r_nbd_other 0.248 r_nbd_refined 0.221 r_xyhbond_nbd_refined 0.196 r_symmetry_hbond_refined 0.177 r_chiral_restr 0.107 r_nbtor_other 0.086 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_gen_planes_other 0.003 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1535 Nucleic Acid Atoms Solvent Atoms 123 Heterogen Atoms 25
Software Software Software Name Purpose ADSC data collection MOLREP phasing REFMAC refinement DENZO data reduction SCALEPACK data scaling